BED File

Type: object

A file in the browser extensible data (BED) format, containing a collection of genomic intervals.

No Additional Properties

Type: string

The schema to use.


Type: object

Type: enum (of string)

The compression format.

Must be one of:

  • "none"
  • "gzip"
  • "bzip2"
  • "bgzip"

Type: enum (of string)

Format of the BED file. If "BED", the exact format is determined by the number of columns inside the file (from 3 to 12). When using the "BED15" extension for microarray tracks, there should be exactly 15 columns in the file. For "BED detail", the first 4 to 12 columns of the standard BED format should be present, followed by exactly two additional fields (ID and description).

Must be one of:

  • "BED"
  • "BED15"
  • "BED detail"

Type: object

Tabix file to index the intervals. If present, the intervals in this BED file must be sorted by their genomic position, and compression must be set to "bgzip".

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"

Type: object

Location of additional metadata for this file, typically stored as a list (via the simple_list schema). Ommitted if no other metadata is provided.

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"
Type: object

If the conditions in the "If" tab are respected, then the conditions in the "Then" tab should be respected. Otherwise, the conditions in the "Else" tab should be respected.

Type: object

The following properties are required:

  • index
Type: object

Type: boolean Default: false

Is this a child document, only to be interpreted in the context of the parent document from which it is linked? This may have implications for search and metadata requirements.

Type: string

MD5 checksum for the file.

Type: string

Path to the file in the project directory.