Genomic Ranges

Type: object

Genomic ranges, stored in a CSV file (see here for a detailed specification). Each row of the CSV corresponds to a genomic range. The file should contain at least the columns seqnames (character), start (integer), end (integer), and strand (string, one of -, + or *). Both start and end are 1-based positions where end is inclusive, i.e., the genomic interval is defined as [start, end]. If the genomic_ranges.names property is present, the first column of the CSV file contains the names of the ranges.

No Additional Properties

Type: string

The schema to use.

Type: object
No Additional Properties

Type: enum (of string)

Type of compression applied to the file.

Must be one of:

  • "none"
  • "gzip"
  • "bzip2"

Type: integer

Number of entries.

Type: boolean Default: false

Whether the ranges are named. If true, the first column of CSV contains the names of the individual ranges.

Type: object

Location of additional metadata for this object, typically stored as a list (via the basic_list schema).

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"

Type: object

Location of additional annotations for each genomic range. If omitted, no additional annotations are present.

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"

Type: object

Location of the file containing the sequence information.

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"

Type: boolean Default: false

Is this a child document, only to be interpreted in the context of the parent document from which it is linked? This may have implications for search and metadata requirements.

Type: string

MD5 checksum for the file.

Type: string

Path to the file in the project directory.