Sequence information

Type: object

Sequence information, stored in a CSV file (see here for a detailed specification). This contains a data frame with one row per reference sequence in the custom annotation. It has at least the columns seqnames (string), seqlengths (integer), isCircular (boolean), and genome (string).

 No Additional Properties

root $schema
Type: string

The schema to use.

root is_child
Type: boolean Default: false

Is this a child document, only to be interpreted in the context of the parent document from which it is linked? This may have implications for search and metadata requirements.

root md5sum
Type: string

MD5 checksum for the file.

root path
Type: string

Path to the file in the project directory.

root sequence_information
Type: object
No Additional Properties

root sequence_information compression
Type: enum (of string)

Type of compression applied to the file.

Must be one of:

  • "none"
  • "gzip"
  • "bzip2"

root sequence_information dimensions
Type: array of integer

Dimensions of a two-dimensional object.

Must contain a minimum of 2 items

Must contain a maximum of 2 items

No Additional Items

Each item of this array must be:

root sequence_information dimensions dimensions items
Type: integer