Sequences for DNA, RNA or protein molecules, plus some extra annotations. This corresponds to a XStringSet object from the Biostrings Bioconductor package. If the sequences are associated with quality scores, this corresponds instead to a QualityScaledXStringSet object.
The schema to use.
Is this a child document, only to be interpreted in the context of the parent document from which it is linked? This may have implications for search and metadata requirements.
Path to the file in the project directory.
Whether the sequences were named. If false, placeholder names are created in the sequence file at sequence_file; these should be ignored for further processing.
A list containing additional annotations for the object. Omitted if no annotations are present.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.
A data frame containing additional annotations for each sequence. Each row corresponds to a sequence in the FASTA/FASTQ file. Omitted if no annotations are present.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.
Biological sequences in FASTA or FASTQ format. The nature of the sequence and the presence/type of quality scores is determined from the sequence_file's own metadata.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.