A summarized experiment where each row corresponds to a feature and each column corresponds to an experimental sample. The layout of this data structure is based on Bioconductor's SummarizedExperiment class. This metadata document contains pointers to the various components of the summarized experiment, including the row data, column data and assays.
No Additional PropertiesThe schema to use.
Is this a child document, only to be interpreted in the context of the parent document from which it is linked? This may have implications for search and metadata requirements.
Path to the file in the project directory.
An array of pointers to the assay data. Each entry corresponds to a single assay in the summarized experiment object.
Must contain a minimum of 1 items
Name of the assay. Each assay must have a non-empty name. Assay names should not be duplicated within assays.
Must be at least 1 characters long
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.
Pointer to the column data. This should be data frame (as defined by the data_frame schema) where each row corresponds to a column of the summarized experiment and each column contains some annotation for the experimental samples. Omitted if no sample-level annotation is present.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.
Dimensions of a two-dimensional object.
Must contain a minimum of 2 items
Must contain a maximum of 2 items
Pointer to the additional metadata for this object, typically stored as a list (via the basic_list schema). Omitted if no additional metadata is present.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.
Pointer to the row data. This should be data frame (as defined by the data_frame schema) where each row corresponds to a row of the summarized experiment and each column contains some annotation for the features. Omitted if no feature-level annotation is present.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.
Pointer to the genomic coordinates corresponding to the rows. This should comply with the genomic_ranges or genomic_ranges_list schemas, where each range or group defines the genomic location of the feature corresponding to a row of the summarized experiment. Omitted if no genomic coordinates are present. This is based on Bioconductor's RangedSummarizedExperiment class.
Relative path of the resource from the root of the project directory.
Type of file. Local files should be present in the same project directory.