VCF File

Type: object

A Variant Call Format file containing variant calling information.

No Additional Properties

Type: string

The schema to use.

Type: boolean Default: false

Is this a child document, only to be interpreted in the context of the parent document from which it is linked? This may have implications for search and metadata requirements.

Type: string

MD5 checksum for the file.

Type: string

Path to the file in the project directory.


Type: object

Type: enum (of string)

The compression format.

Must be one of:

  • "none"
  • "gzip"
  • "bzip2"
  • "bgzip"

Type: boolean

Whether this file only contains the VCF headers, but no data. This is set to true when another object contains the VCF data, e.g., in a vcf_experiment.

Type: object

Tabix file to index the variants. If present, the variants in this VCF file are sorted by their genomic position, and compression must be set to "bgzip".

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"

Type: object

Location of additional metadata for this file, typically stored as a list (via the simple_list schema). Ommitted if no other metadata is provided.

Type: object

Type: string

Relative path of the resource from the root of the project directory.

Type: enum (of string)

Type of file. Local files should be present in the same project directory.

Must be one of:

  • "local"
Type: object

If the conditions in the "If" tab are respected, then the conditions in the "Then" tab should be respected. Otherwise, the conditions in the "Else" tab should be respected.

Type: object

The following properties are required:

  • index
Type: object